Journal Paper

1. "MEGAP: A Comprehensive Pipeline for Automatic Preprocessing of Large-Scale Magnetoencephalography Data"
   Seyyed Erfan Mohammadi, Hasti Shabani, Mohammad mahdi Begmaz, Narjes Soltani Dehaghani
   PSYCHOPHYSIOLOGY, Vol. 62, pp.1-14, 2025
2. "Training Set Design for Uneven Illumination Correction in High-Resolution Whole Slide Images"
   Sama Nemati, Hasti Shabani, Ahmad Mahmoudi-Aznaveh
   Journal of Biomedical Physics and Engineering, Vol. 15, pp.291-298, 2025
3. "Leveraging an ensemble of EfficientNetV1 and EfficientNetV2 models for classification and interpretation of breast cancer histopathology images"
   Mahdi Azmoodeh-Kalati, Hasti Shabani, Mohammad Sadegh Maghareh, Zeynab Barzegar, Reza Lashgari
   Scientific Reports, Vol. 15, pp.21541-21566, 2025
4. "A comparative analysis of pairwise image stitching techniques for microscopy images"
   Fatemeh Sadat Mohammadi, Seyyed Erfan Mohammadi, Parsa Mojarad, Seyyed Mohammad Ali Mirkarimi, Hasti Shabani
   Scientific Reports, Vol. 14, 2024
5. "Fast and robust feature-based stitching algorithm for microscopic images"
   Fatemeh Sadat Mohammadi, Hasti Shabani, Mojtaba Zarei
   Scientific Reports, Vol. 14, pp.1-11, 2024
6. "Reduced Deep Convolutional Activation Features (R-DeCAF) in Histopathology Images to Improve the Classification Performance for Breast Cancer Diagnosis"
   Bahareh Morovati, Reza Lashgari, Mojtaba Hajihasani, Hasti Shabani
   JOURNAL OF DIGITAL IMAGING, Vol. 36, pp.2602-2612, 2023
7. "Optical transfer function engineering for a tunable 3D structured illumination microscope"
   Hasti Shabani, Ana Doblas, Genaro Saavedra, Chrysanthe Preza
   OPTICS LETTERS, Vol. 44, pp.1560-1563, 2019
8. "Tunable-frequency three-dimensional structured illumination microscopy with reduced data-acquisition"
   Ana Doblas, Hasti Shabani, Genaro Saavedra, Chrysanthe Preza
   OPTICS EXPRESS, Vol. 26, pp.30476-30491, 2018
9. "Improvement of two-dimensional structured illumination microscopy with an incoherent illumination pattern of tunable frequency"
   Hasti Shabani, Ana Doblas, Genaro Saavedra, Emilio Sanchez-Ortiga, Chrysanthe Preza
   APPLIED OPTICS, Vol. 57, 2018
10. "Experimental validation of a customized phase mask designed to enable efficient computational optical sectioning microscopy through wavefront encoding"
    Nurmohammed Patwary, Hasti Shabani, Ana Doblas, Genaro Saavedra, Chrysanthe Preza
    APPLIED OPTICS, Vol. 56, 2017

Conference Paper

1. "Uneven Illumination Correction in Whole Slide Imaging using Pix2Pix"
   Sama Nemati, Hasti Shabani
   32st International Conference on Electrical Engineering, No 32 , 2024
2. "Enhancing Brain Tumor Classification in OCT Images Using Local Phase Quantization Features"
   Naeem Eslamyeh Hamedani, Hasti Shabani
   32st International Conference on Electrical Engineering, No 32 , pp.1-8, 2024
3. "Improving Double U-Net for Nuclei Instance Segmentation in Histopathology Images"
   Seyed Amin Seyed Jafari, Hasti Shabani, Reza Lashgari
   30th National and 8th International Iranian Conference on Biomedical Engineering (ICBME 2023), 2023